Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11892420	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12478609	0.87[ASN][1000 genomes]
rs12989813	0.90[ASN][1000 genomes]
rs12990145	0.91[ASN][1000 genomes]
rs13383575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13406065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1583217	0.88[ASN][1000 genomes]
rs16853634	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16853644	0.84[ASN][1000 genomes]
rs16853653	0.84[ASN][1000 genomes]
rs16853655	0.84[ASN][1000 genomes]
rs16853681	0.82[ASN][1000 genomes]
rs1919851	0.86[ASN][1000 genomes]
rs2052982	0.90[ASN][1000 genomes]
rs58116928	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59149606	0.91[ASN][1000 genomes]
rs61416591	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6725601	0.97[ASN][1000 genomes]
rs6731834	0.86[ASN][1000 genomes]
rs67321550	0.91[ASN][1000 genomes]
rs6753105	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67697939	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv834449	chr2:168340043-168511856	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv583592	chr2:168356232-168721539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168366600-168384800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:168367000-168385200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:168379400-168414000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:168384000-168385600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:168384400-168385000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:168384400-168385400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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