Variant report

Variant	rs11898158
Chromosome Location	chr2:113823572-113823573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113819021..113821885-chr2:113822119..113824184,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136695	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11123159	0.86[EUR][1000 genomes]
rs11690459	0.88[EUR][1000 genomes]
rs11883847	0.87[EUR][1000 genomes]
rs11887249	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11897709	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11899198	0.85[EUR][1000 genomes]
rs17042721	0.87[EUR][1000 genomes]
rs17042750	1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17042810	0.85[EUR][1000 genomes]
rs17042888	0.85[EUR][1000 genomes]
rs17486819	1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes]
rs1992761	0.89[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1992762	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1992763	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2121327	0.85[EUR][1000 genomes]
rs28928270	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34200521	0.87[EUR][1000 genomes]
rs34466405	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34517213	0.95[EUR][1000 genomes]
rs35391805	0.87[EUR][1000 genomes]
rs3811053	0.84[EUR][1000 genomes]
rs3811054	0.85[EUR][1000 genomes]
rs56060225	0.85[EUR][1000 genomes]
rs56948778	0.81[EUR][1000 genomes]
rs58036696	0.85[EUR][1000 genomes]
rs58187820	0.85[EUR][1000 genomes]
rs58922543	0.85[EUR][1000 genomes]
rs59032902	0.85[EUR][1000 genomes]
rs60341065	0.85[EUR][1000 genomes]
rs60562399	0.85[EUR][1000 genomes]
rs60924024	0.85[EUR][1000 genomes]
rs72946783	0.85[EUR][1000 genomes]
rs72946788	0.85[EUR][1000 genomes]
rs72950867	0.85[EUR][1000 genomes]
rs73955148	0.85[EUR][1000 genomes]
rs73955151	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv2881	chr2:113800805-113846597	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113817000-113825400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:113817600-113826200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:113820600-113826600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:113823200-113825000	Weak transcription	Placenta	Placenta

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