Variant report

Variant	rs11898191
Chromosome Location	chr13:51744569-51744570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10174811	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11883740	0.81[AMR][1000 genomes]
rs12474830	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12694176	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13006249	0.83[AMR][1000 genomes]
rs13400204	0.87[EUR][1000 genomes]
rs1446595	0.81[CEU][hapmap]
rs1473332	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2365312	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34664825	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4327184	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4672553	0.87[AMR][1000 genomes]
rs4673469	0.83[AMR][1000 genomes]
rs7566113	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs930613	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs979619	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv900080	chr13:51711436-51754873	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51729000-51749200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:51739800-51752800	Weak transcription	Right Atrium	heart
3	chr13:51743200-51748400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:51743400-51745000	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr13:51743400-51746400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr13:51743400-51747400	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr13:51743400-51747600	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr13:51743400-51747800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:51743600-51747600	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr13:51743600-51748000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr13:51743600-51749000	Active TSS	H9 Cell Line	embryonic stem cell
12	chr13:51743600-51749200	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr13:51744000-51745200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr13:51744000-51746800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:51744000-51747400	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr13:51744000-51747600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr13:51744200-51746400	Active TSS	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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