Variant report

Variant	rs11898349
Chromosome Location	chr2:173046291-173046292
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10172507	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10183347	0.97[ASN][1000 genomes]
rs10203383	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10206099	0.87[AMR][1000 genomes]
rs10208791	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1386351	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1386352	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1386353	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1825750	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34085702	0.86[ASN][1000 genomes]
rs6743245	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6751272	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6751564	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173042800-173046400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:173043000-173046800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:173043200-173046600	Weak transcription	Hela-S3	cervix
4	chr2:173044200-173046400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:173044200-173046400	Weak transcription	Thymus	Thymus
6	chr2:173044400-173046400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr2:173045000-173046400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr2:173045000-173046400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr2:173045000-173046600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:173045200-173046600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:173045200-173047200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:173045400-173046400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr2:173045600-173046600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr2:173045800-173047000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr2:173045800-173047400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr2:173046000-173046400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr2:173046000-173046800	Enhancers	Primary T cells from cord blood	blood
18	chr2:173046000-173046800	Enhancers	Primary T cells fromperipheralblood	blood
19	chr2:173046000-173047200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr2:173046000-173047200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:173046000-173047600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:173046200-173046400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr2:173046200-173046400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr2:173046200-173046600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:173046200-173046800	Enhancers	Fetal Intestine Large	intestine
26	chr2:173046200-173047000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr2:173046200-173047000	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr2:173046200-173047000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:173046200-173047000	Enhancers	Fetal Thymus	thymus
30	chr2:173046200-173047000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr2:173046200-173047200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr2:173046200-173047200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr2:173046200-173047200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr2:173046200-173047400	Enhancers	HUES64 Cell Line	embryonic stem cell

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