Variant report

Variant	rs11898398
Chromosome Location	chr2:48981897-48981898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13029423	0.82[AFR][1000 genomes]
rs35429744	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010494	chr2:48767055-49027310	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1002793	chr2:48771220-49466550	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1004965	chr2:48796170-49443587	Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv535684	chr2:48796170-49443587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv498119	chr2:48808834-49422647	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv833992	chr2:48814223-48998037	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48979600-48982000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:48979800-48982000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:48980200-48982400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:48980400-48982400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:48980400-48982400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:48980600-48982000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:48980600-48982400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr2:48980800-48982000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:48980800-48982200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr2:48980800-48982600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr2:48981200-48982000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr2:48981200-48982400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:48981400-48982000	Enhancers	Fetal Muscle Trunk	muscle
14	chr2:48981400-48982400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr2:48981400-48982800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:48981800-48982000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
17	chr2:48981800-48982000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr2:48981800-48982000	Active TSS	Stomach Smooth Muscle	stomach
19	chr2:48981800-48982400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:48981800-48983000	Flanking Active TSS	Adipose Nuclei	Adipose

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