Variant report

Variant	rs11898680
Chromosome Location	chr2:113556867-113556868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113554700..113558289-chr2:113562996..113565231,3	K562	blood:
2	chr2:113554665..113556955-chr2:113568287..113571042,2	K562	blood:
3	chr2:113555926..113558593-chr2:113563370..113565916,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11677416	0.81[AMR][1000 genomes]
rs12469600	0.85[ASN][1000 genomes]
rs12613067	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17561	0.81[AMR][1000 genomes]
rs1800587	0.82[EUR][1000 genomes]
rs1800794	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs1878318	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1878319	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs1878320	0.82[EUR][1000 genomes]
rs1878321	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs1894399	0.81[EUR][1000 genomes]
rs2071375	0.81[AMR][1000 genomes]
rs2856836	0.81[AMR][1000 genomes]
rs2856837	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2856840	0.81[EUR][1000 genomes]
rs2856841	0.81[AMR][1000 genomes]
rs34015482	0.81[AMR][1000 genomes]
rs3783514	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3783520	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4848303	0.80[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4848304	0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4849119	0.81[AMR][1000 genomes]
rs59674541	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61381693	0.82[AMR][1000 genomes]
rs697	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72825514	0.81[AMR][1000 genomes]
rs72825532	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7368808	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7583261	0.80[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113542400-113559200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:113543000-113562200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:113552800-113560800	Weak transcription	Osteobl	bone
4	chr2:113553600-113559000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:113553600-113559000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:113553600-113561200	Weak transcription	K562	blood
7	chr2:113553600-113562800	Weak transcription	Esophagus	oesophagus
8	chr2:113553800-113557400	Weak transcription	Placenta	Placenta
9	chr2:113553800-113558400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:113553800-113559200	Weak transcription	Hela-S3	cervix
11	chr2:113553800-113563000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:113554400-113557000	Weak transcription	HMEC	breast
13	chr2:113554400-113558800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:113554600-113557000	Weak transcription	NHEK	skin
15	chr2:113555600-113563200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:113555800-113557800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:113556000-113557800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr2:113556200-113557800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr2:113556200-113557800	Enhancers	Primary hematopoietic stem cells	blood
20	chr2:113556200-113558600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:113556600-113557600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr2:113556600-113557800	Enhancers	Monocytes-CD14+_RO01746	blood

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