Variant report

Variant	rs11900579
Chromosome Location	chr2:115916851-115916852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:115916810-115916860	SKMC	muscle:	n/a
2	chr2:115916810-115916860	Jurkat	blood:	n/a
3	chr2:115916810-115916860	MCF-7	breast:	n/a
4	chr2:115916810-115916860	AG09309	skin:	n/a
5	chr2:115916810-115916860	PrEC	prostate:	n/a
6	chr2:115916810-115916860	ProgFib	skin:	n/a
7	chr2:115916810-115916860	GM12878	blood:	n/a
8	chr2:115916810-115916860	RPTEC	kidney:	n/a
9	chr2:115916810-115916860	BE2_C	brain:	n/a
10	chr2:115916810-115916860	GM06990	blood:	n/a
11	chr2:115916810-115916860	HepG2	liver:	n/a
12	chr2:115916810-115916860	IMR90	lung:	fetal
13	chr2:115916810-115916860	HEEpiC	esophagus:	n/a
14	chr2:115916810-115916860	HEK293	kidney:	embryo
15	chr2:115916810-115916860	HMEC	breast:	n/a
16	chr2:115916810-115916860	K562	blood:	n/a
17	chr2:115916810-115916860	AG04450	lung:	fetal
18	chr2:115916810-115916860	HRE	kidney:	n/a
19	chr2:115916810-115916860	SK-N-SH_RA	brain:	n/a
20	chr2:115916810-115916860	T-47D	breast:	n/a
21	chr2:115916810-115916860	LNCaP	prostate:	n/a
22	chr2:115916810-115916860	HL-60	blood:	n/a
23	chr2:115916810-115916860	AG09319	gingival:	n/a
24	chr2:115916810-115916860	HIPEpiC	eye:	n/a
25	chr2:115916810-115916860	ECC-1	luminal epithelium:	n/a
26	chr2:115916810-115916860	SK-N-SH	brain:	n/a
27	chr2:115916810-115916860	Caco-2	colon:	n/a
28	chr2:115916810-115916860	HUVEC	blood vessel:	n/a
29	chr2:115916810-115916860	MCF10A-Er-Src	breast:	n/a
30	chr2:115916810-115916860	Hepatocyte	liver:	n/a
31	chr2:115916810-115916860	SAEC	small airway:	n/a
32	chr2:115916810-115916860	Hela-S3	cervix:	n/a
33	chr2:115916810-115916860	A549	lung:	n/a
34	chr2:115916810-115916860	HAEpiC	amniotic membrane:	n/a
35	chr2:115916810-115916860	U87	brain:	n/a
36	chr2:115916810-115916860	SK-N-MC	brain:	n/a
37	chr2:115916810-115916860	HCT-116	colon:	n/a
38	chr2:115916810-115916860	GM19239	blood:	n/a
39	chr2:115916810-115916860	NT2-D1	testis:	n/a
40	chr2:115916810-115916860	AG10803	skin:	n/a
41	chr2:115916810-115916860	GM12892	blood:	n/a
42	chr2:115916810-115916860	NB4	blood:	n/a
43	chr2:115916810-115916860	GM12891	blood:	n/a
44	chr2:115916810-115916860	PANC-1	pancreas:	n/a
45	chr2:115916810-115916860	HPAEpiC	pulmonary alveolar:	n/a
46	chr2:115916810-115916860	HNPCEpiC	eye:	n/a
47	chr2:115916810-115916860	NHDF-neo	bronchial:	n/a
48	chr2:115916810-115916860	PFSK-1	brain:	n/a
49	chr2:115916810-115916860	BJ	skin:	n/a
50	chr2:115916810-115916860	HCM	heart:	n/a

No data

Variant related genes	Relation type
DPP10	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17044245	1.00[AMR][1000 genomes]
rs17044256	1.00[AMR][1000 genomes]
rs2420814	1.00[AMR][1000 genomes]
rs7563349	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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