Variant report

Variant	rs11901070
Chromosome Location	chr2:63126755-63126756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63124782..63127343-chr2:63145602..63147733,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDPCP-7	chr2:63126676-63126780	refGeneNc_632_NR_027069

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11897498	0.84[CEU][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17027450	0.83[ASW][hapmap];0.91[YRI][hapmap]
rs17027529	0.83[ASW][hapmap];0.91[YRI][hapmap]
rs17408037	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17473098	0.84[CEU][hapmap]
rs17474231	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs17577380	0.82[AFR][1000 genomes]
rs2068312	0.83[ASW][hapmap];0.91[YRI][hapmap]
rs41363353	1.00[CEU][hapmap];0.96[GIH][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs56078239	0.82[EUR][1000 genomes]
rs72807574	0.82[AMR][1000 genomes]
rs72807582	0.81[EUR][1000 genomes]
rs72807583	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv428041	chr2:63027947-63206574	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1006848	chr2:63061816-63631407	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv2756598	chr2:63085848-63491438	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	esv3445000	chr2:63126696-63126950	Strong transcription Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63102400-63146200	Weak transcription	Aorta	Aorta
2	chr2:63102600-63149800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:63102800-63130600	Weak transcription	Fetal Intestine Small	intestine
4	chr2:63102800-63150200	Weak transcription	Esophagus	oesophagus
5	chr2:63104000-63147800	Weak transcription	Fetal Stomach	stomach
6	chr2:63104600-63133200	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:63105800-63130000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:63105800-63130800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr2:63105800-63134000	Weak transcription	Osteobl	bone
10	chr2:63106000-63131600	Weak transcription	Fetal Intestine Large	intestine
11	chr2:63106000-63149600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr2:63106200-63149400	Weak transcription	Ovary	ovary
13	chr2:63106400-63138000	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:63107000-63150200	Weak transcription	HSMM	muscle
15	chr2:63107200-63141600	Weak transcription	Primary B cells from cord blood	blood
16	chr2:63107200-63146000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:63107200-63146000	Weak transcription	Left Ventricle	heart
18	chr2:63108200-63129000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr2:63108200-63130000	Weak transcription	Brain Germinal Matrix	brain
20	chr2:63108200-63149200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:63108200-63149600	Weak transcription	Fetal Lung	lung
22	chr2:63110600-63127200	Weak transcription	Dnd41	blood
23	chr2:63119000-63137000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr2:63120000-63129400	Strong transcription	HepG2	liver
25	chr2:63122000-63127400	Weak transcription	Psoas Muscle	Psoas
26	chr2:63122200-63128400	Weak transcription	Liver	Liver
27	chr2:63122400-63137600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr2:63122800-63128200	Weak transcription	Fetal Heart	heart
29	chr2:63122800-63134000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:63122800-63166600	Weak transcription	HMEC	breast
31	chr2:63123000-63149400	Weak transcription	NHLF	lung
32	chr2:63123600-63127000	Strong transcription	NHDF-Ad	bronchial
33	chr2:63123600-63129200	Weak transcription	Fetal Kidney	kidney
34	chr2:63123600-63141000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr2:63123600-63144200	Weak transcription	A549	lung
36	chr2:63123600-63146200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr2:63123600-63148800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr2:63123800-63149800	Weak transcription	NHEK	skin
39	chr2:63124000-63134600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:63124200-63127800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr2:63124200-63129400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:63124800-63127200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr2:63125400-63127800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr2:63125600-63127000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr2:63126200-63127000	Strong transcription	Adipose Nuclei	Adipose
46	chr2:63126200-63146000	Weak transcription	Primary T cells from cord blood	blood
47	chr2:63126400-63127200	Enhancers	Rectal Smooth Muscle	rectum

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