Variant report

Variant	rs11901425
Chromosome Location	chr2:205957341-205957342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11890361	0.88[AMR][1000 genomes]
rs11895950	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12999205	0.86[AMR][1000 genomes]
rs13000345	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17283915	0.88[ASN][1000 genomes]
rs34968953	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71427767	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205953400-205978600	Weak transcription	Fetal Lung	lung
2	chr2:205953400-206007200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:205954200-205957400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:205956000-205958200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr2:205956400-205958800	Enhancers	Primary T cells from cord blood	blood
6	chr2:205956600-205958200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr2:205956600-205958200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr2:205956600-205959000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr2:205956800-205958000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:205956800-205958000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr2:205956800-205958200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:205957000-205957400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:205957000-205957400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:205957200-205957600	Enhancers	Primary T cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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