Variant report

Variant	rs11901649
Chromosome Location	chr2:21250223-21250224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10199768	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1469513	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11901649	APOB	cis	brain	BrainEAC

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21234800-21262200	Weak transcription	Ovary	ovary
2	chr2:21235000-21261800	Strong transcription	Fetal Intestine Large	intestine
3	chr2:21240600-21250600	Weak transcription	Adipose Nuclei	Adipose
4	chr2:21242800-21251000	Weak transcription	Left Ventricle	heart
5	chr2:21247000-21252600	Strong transcription	Fetal Intestine Small	intestine
6	chr2:21247600-21254000	Genic enhancers	HepG2	liver
7	chr2:21248600-21252600	Strong transcription	Duodenum Mucosa	Duodenum
8	chr2:21248800-21250600	Weak transcription	Aorta	Aorta
9	chr2:21249800-21251000	Strong transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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