Variant report

Variant	rs11902041
Chromosome Location	chr2:57035235-57035236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:57035108..57036803-chr2:57124744..57126282,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10175703	0.86[EUR][1000 genomes]
rs10175921	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10182642	0.86[EUR][1000 genomes]
rs10193478	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10202272	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10208734	0.86[EUR][1000 genomes]
rs11125648	0.86[EUR][1000 genomes]
rs11125659	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11885280	0.86[EUR][1000 genomes]
rs11885371	0.86[EUR][1000 genomes]
rs11889432	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11889483	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11893528	0.86[EUR][1000 genomes]
rs11894249	0.86[EUR][1000 genomes]
rs11895018	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897725	0.86[EUR][1000 genomes]
rs11900216	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12105442	0.86[EUR][1000 genomes]
rs12465575	0.86[EUR][1000 genomes]
rs12472267	0.86[EUR][1000 genomes]
rs12477721	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13387012	0.86[EUR][1000 genomes]
rs13387189	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13400486	1.00[EUR][1000 genomes]
rs13411712	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13415063	0.86[EUR][1000 genomes]
rs13419971	1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs13423875	0.86[EUR][1000 genomes]
rs17048395	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1996704	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28501480	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28591144	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28604555	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28682440	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4671294	0.86[EUR][1000 genomes]
rs4672146	0.86[EUR][1000 genomes]
rs4672147	0.86[EUR][1000 genomes]
rs4672148	0.86[EUR][1000 genomes]
rs4672155	1.00[EUR][1000 genomes]
rs4672157	1.00[EUR][1000 genomes]
rs4672158	1.00[EUR][1000 genomes]
rs60798964	0.86[EUR][1000 genomes]
rs6729559	0.86[EUR][1000 genomes]
rs6742211	0.86[EUR][1000 genomes]
rs6758203	0.86[EUR][1000 genomes]
rs7572849	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577678	0.86[EUR][1000 genomes]
rs7583523	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv582059	chr2:56892585-57175087	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv535727	chr2:56895497-57059359	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1007347	chr2:56904928-57100439	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv582060	chr2:56941668-57137622	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1002180	chr2:57019964-57130245	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:57034400-57039000	Weak transcription	NHEK	skin
2	chr2:57034600-57039200	Weak transcription	Hela-S3	cervix
3	chr2:57035000-57035400	Enhancers	A549	lung

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