Variant report
| Variant | rs11902360 |
|---|---|
| Chromosome Location | chr2:171768908-171768909 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000266020 | TF binding region |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10803853 | 0.84[EUR][1000 genomes] |
| rs11686985 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11902369 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12621769 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13025033 | 0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs16859050 | 0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2098999 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2195116 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs3755124 | 0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3755126 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4667667 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4668343 | 0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4668344 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4668345 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4668346 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4668354 | 0.84[ASN][1000 genomes] |
| rs6433264 | 0.92[ASN][1000 genomes] |
| rs6433266 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6433267 | 0.83[EUR][1000 genomes] |
| rs6729847 | 0.82[EUR][1000 genomes] |
| rs6731774 | 0.82[ASN][1000 genomes] |
| rs6742564 | 0.81[ASN][1000 genomes] |
| rs7559136 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7560889 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7567927 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7585607 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7598194 | 0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv431801 | chr2:171721493-171966493 | ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11902360 | TLK1 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:171762600-171771600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
