Variant report

Variant	rs11902501
Chromosome Location	chr2:188847774-188847775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11884747	1.00[AMR][1000 genomes]
rs11889875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11890009	1.00[AMR][1000 genomes]
rs11895643	1.00[AMR][1000 genomes]
rs11895660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11897441	1.00[AMR][1000 genomes]
rs13385178	1.00[AMR][1000 genomes]
rs2102760	1.00[AMR][1000 genomes]
rs7590870	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533353	chr2:188498301-189024655	Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875597	chr2:188573244-188916290	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1011832	chr2:188631943-188896492	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv536087	chr2:188631943-188896492	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv584041	chr2:188644642-188928433	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv523293	chr2:188774681-188928433	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv470503	chr2:188837548-188896397	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv584043	chr2:188837548-188896397	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188842800-188851000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:188843200-188850000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:188843200-188851000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:188843400-188850400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:188843400-188850400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:188843400-188850400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:188843600-188850600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:188844200-188850400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:188846800-188848200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:188846800-188848600	Enhancers	Liver	Liver
11	chr2:188847000-188848200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:188847000-188848400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:188847200-188848200	Enhancers	Osteobl	bone
14	chr2:188847200-188848400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:188847200-188848400	Enhancers	HSMM	muscle
16	chr2:188847200-188848400	Enhancers	NHDF-Ad	bronchial
17	chr2:188847200-188848800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr2:188847200-188849200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr2:188847400-188847800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:188847400-188847800	Enhancers	Fetal Heart	heart
21	chr2:188847400-188848000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr2:188847400-188848000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr2:188847400-188848200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:188847400-188848200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr2:188847400-188848200	Enhancers	NH-A	brain
26	chr2:188847400-188848400	Enhancers	Adipose Nuclei	Adipose
27	chr2:188847400-188848600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:188847600-188848000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:188847600-188848200	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr2:188847600-188848400	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr2:188847600-188848600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr2:188847600-188848600	Enhancers	GM12878-XiMat	blood
33	chr2:188847600-188849000	Enhancers	Primary B cells from peripheral blood	blood

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