Variant report

Variant	rs11903201
Chromosome Location	chr2:160919457-160919458
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr2:160919317-160919495	T-47D	breast:	n/a	n/a
2	POLR2A	chr2:160918896-160919513	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr2:160918780-160919461	HUVEC	blood vessel:	n/a	n/a
4	ZNF143	chr2:160918737-160919532	H1-hESC	embryonic stem cell:	n/a	n/a
5	STAT3	chr2:160919364-160919484	MCF10A-Er-Src	breast:	n/a	n/a
6	TCF12	chr2:160919283-160919533	H1-hESC	embryonic stem cell:	n/a	chr2:160919450-160919460
7	POLR2A	chr2:160918950-160919502	MCF-7	breast:	n/a	n/a
8	POLR2A	chr2:160919041-160919471	MCF-7	breast:	n/a	n/a
9	FOXA2	chr2:160919124-160919692	A549	lung:	n/a	n/a
10	POLR2A	chr2:160918719-160919580	HUVEC	blood vessel:	n/a	n/a
11	POLR2A	chr2:160919055-160919467	MCF-7	breast:	n/a	n/a
12	SP1	chr2:160918972-160919514	A549	lung:	n/a	chr2:160919035-160919049 chr2:160919035-160919045 chr2:160919162-160919174 chr2:160919184-160919198 chr2:160919036-160919045 chr2:160919035-160919045 chr2:160919034-160919046 chr2:160919190-160919204 chr2:160919034-160919046 chr2:160919163-160919173 chr2:160919163-160919173 chr2:160919035-160919044
13	POLR2A	chr2:160918846-160919465	A549	lung:	n/a	n/a
14	TBP	chr2:160919187-160919573	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr2:160918827-160919525	MCF10A-Er-Src	breast:	n/a	n/a
16	STAT3	chr2:160919273-160919537	MCF10A-Er-Src	breast:	n/a	n/a
17	SIN3AK20	chr2:160919146-160919485	A549	lung:	n/a	n/a
18	POLR2A	chr2:160918898-160919502	MCF10A-Er-Src	breast:	n/a	n/a
19	STAT3	chr2:160919396-160919579	MCF10A-Er-Src	breast:	n/a	n/a
20	ZBTB7A	chr2:160918439-160919487	ECC-1	luminal epithelium:	n/a	chr2:160918726-160918733
21	SP1	chr2:160918935-160919558	A549	lung:	n/a	chr2:160919035-160919049 chr2:160919035-160919045 chr2:160919162-160919174 chr2:160919184-160919198 chr2:160919036-160919045 chr2:160919035-160919045 chr2:160919034-160919046 chr2:160919190-160919204 chr2:160919034-160919046 chr2:160919163-160919173 chr2:160919163-160919173 chr2:160919035-160919044
22	MAX	chr2:160919000-160919518	A549	lung:	n/a	n/a
23	POLR2A	chr2:160918859-160919538	ProgFib	skin:	n/a	n/a
24	POLR2A	chr2:160918907-160919630	H1-hESC	embryonic stem cell:	n/a	n/a
25	SIN3A	chr2:160919003-160919668	H1-hESC	embryonic stem cell:	n/a	n/a
26	TEAD4	chr2:160918965-160919514	ECC-1	luminal epithelium:	n/a	n/a
27	MAZ	chr2:160918546-160919930	IMR90	lung:	n/a	n/a
28	CHD2	chr2:160918926-160919477	H1-hESC	embryonic stem cell:	n/a	chr2:160919029-160919039
29	POLR2A	chr2:160919010-160919477	H1-hESC	embryonic stem cell:	n/a	n/a
30	MAX	chr2:160918696-160919654	A549	lung:	n/a	n/a
31	FOXA2	chr2:160919156-160919525	A549	lung:	n/a	n/a
32	FOXA1	chr2:160919231-160919523	T-47D	breast:	n/a	n/a
33	TAF1	chr2:160919271-160919581	H1-hESC	embryonic stem cell:	n/a	n/a
34	TAF1	chr2:160919030-160919514	H1-hESC	embryonic stem cell:	n/a	n/a
35	TEAD4	chr2:160919051-160919505	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr2:160918732-160919550	HUVEC	blood vessel:	n/a	n/a
37	TCF12	chr2:160918972-160919751	A549	lung:	n/a	chr2:160919450-160919460

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:160919431-160919481	HEK293	kidney:	embryo
2	chr2:160919431-160919481	AG10803	skin:	n/a
3	chr2:160919431-160919481	AG04449	skin:	fetal
4	chr2:160919431-160919481	HPAEpiC	pulmonary alveolar:	n/a
5	chr2:160919431-160919481	MCF10A-Er-Src	breast:	n/a
6	chr2:160919431-160919481	AG04450	lung:	fetal
7	chr2:160919431-160919481	HNPCEpiC	eye:	n/a
8	chr2:160919431-160919481	PFSK-1	brain:	n/a
9	chr2:160919431-160919481	HUVEC	blood vessel:	n/a
10	chr2:160919431-160919481	Jurkat	blood:	n/a
11	chr2:160919431-160919481	HIPEpiC	eye:	n/a
12	chr2:160919431-160919481	SK-N-SH	brain:	n/a
13	chr2:160919431-160919481	HCT-116	colon:	n/a
14	chr2:160919431-160919481	GM12878	blood:	n/a
15	chr2:160919431-160919481	Hela-S3	cervix:	n/a
16	chr2:160919431-160919481	HCF	heart:	n/a
17	chr2:160919431-160919481	HRCEpiC	kidney:	n/a
18	chr2:160919431-160919481	NH-A	brain:	n/a
19	chr2:160919431-160919481	GM06990	blood:	n/a
20	chr2:160919431-160919481	AG09309	skin:	n/a
21	chr2:160919431-160919481	BJ	skin:	n/a
22	chr2:160919431-160919481	T-47D	breast:	n/a
23	chr2:160919431-160919481	ovcar-3	ovarian:	n/a
24	chr2:160919431-160919481	Hepatocyte	liver:	n/a
25	chr2:160919431-160919481	NT2-D1	testis:	n/a
26	chr2:160919431-160919481	ProgFib	skin:	n/a
27	chr2:160919431-160919481	AoSMC	blood vessel:	n/a
28	chr2:160919431-160919481	HEEpiC	esophagus:	n/a
29	chr2:160919431-160919481	H1-hESC	embryonic stem cell:	embryo
30	chr2:160919431-160919481	HAEpiC	amniotic membrane:	n/a
31	chr2:160919431-160919481	HMEC	breast:	n/a
32	chr2:160919431-160919481	NB4	blood:	n/a
33	chr2:160919431-160919481	BE2_C	brain:	n/a
34	chr2:160919431-160919481	SAEC	small airway:	n/a
35	chr2:160919431-160919481	GM12892	blood:	n/a
36	chr2:160919431-160919481	HRPEpiC	eye:	n/a
37	chr2:160919431-160919481	NHBE	bronchial:	n/a
38	chr2:160919431-160919481	NHDF-neo	bronchial:	n/a
39	chr2:160919431-160919481	GM12891	blood:	n/a
40	chr2:160919431-160919481	K562	blood:	n/a
41	chr2:160919431-160919481	ECC-1	luminal epithelium:	n/a
42	chr2:160919431-160919481	Caco-2	colon:	n/a
43	chr2:160919431-160919481	GM19239	blood:	n/a
44	chr2:160919431-160919481	AG09319	gingival:	n/a
45	chr2:160919431-160919481	HL-60	blood:	n/a
46	chr2:160919431-160919481	HCM	heart:	n/a
47	chr2:160919431-160919481	HepG2	liver:	n/a
48	chr2:160919431-160919481	A549	lung:	n/a
49	chr2:160919431-160919481	HRE	kidney:	n/a
50	chr2:160919431-160919481	PANC-1	pancreas:	n/a

Variant related genes	Relation type
PLA2R1	TF binding region
PLA2R1	CpG island

rs_ID	r²[population]
rs11888415	1.00[YRI][hapmap]
rs11889074	1.00[YRI][hapmap]

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160916800-160919600	Active TSS	Fetal Kidney	kidney
2	chr2:160917800-160919600	Active TSS	Rectal Smooth Muscle	rectum
3	chr2:160918000-160919600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:160918000-160919600	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr2:160918000-160919600	Active TSS	NHDF-Ad	bronchial
6	chr2:160918000-160919800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:160918000-160919800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:160918200-160919600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr2:160918200-160919600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr2:160918200-160919600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr2:160918200-160919600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
12	chr2:160918200-160919600	Active TSS	Esophagus	oesophagus
13	chr2:160918200-160919600	Active TSS	Spleen	Spleen
14	chr2:160918200-160919600	Active TSS	A549	lung
15	chr2:160918200-160919600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
16	chr2:160918200-160919600	Active TSS	NHLF	lung
17	chr2:160918200-160919800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
18	chr2:160918200-160919800	Active TSS	H9 Cell Line	embryonic stem cell
19	chr2:160918200-160919800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
20	chr2:160918200-160919800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr2:160918200-160919800	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr2:160918200-160919800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:160918200-160919800	Active TSS	Aorta	Aorta
24	chr2:160918200-160919800	Active TSS	Brain Angular Gyrus	brain
25	chr2:160918200-160919800	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr2:160918200-160919800	Active TSS	Ovary	ovary
27	chr2:160918200-160920000	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr2:160918400-160919600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr2:160918400-160919600	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr2:160918400-160919600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr2:160918400-160919600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr2:160918400-160919600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
33	chr2:160918400-160919600	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr2:160918400-160919600	Active TSS	Right Ventricle	heart
35	chr2:160918400-160919800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr2:160918400-160919800	Active TSS	Brain Anterior Caudate	brain
37	chr2:160918400-160919800	Active TSS	Right Atrium	heart
38	chr2:160918400-160920000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:160918400-160920800	Enhancers	Fetal Brain Male	brain
40	chr2:160918600-160919600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr2:160918600-160919600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:160918600-160919600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr2:160918600-160919600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
44	chr2:160918600-160919600	Active TSS	Brain Cingulate Gyrus	brain
45	chr2:160918600-160919600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
46	chr2:160918600-160919600	Active TSS	Hela-S3	cervix
47	chr2:160918600-160919800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
48	chr2:160918600-160919800	Active TSS	Brain Inferior Temporal Lobe	brain
49	chr2:160918800-160919600	Active TSS	Pancreas	Pancrea
50	chr2:160919000-160919600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived

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