Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10496488	0.94[ASN][1000 genomes]
rs11123277	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11123281	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11677549	0.99[ASN][1000 genomes]
rs11690485	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11692516	0.99[ASN][1000 genomes]
rs11692542	0.94[ASN][1000 genomes]
rs11695064	0.97[ASN][1000 genomes]
rs11902365	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12477921	0.94[ASN][1000 genomes]
rs12987050	0.97[ASN][1000 genomes]
rs12987277	0.97[ASN][1000 genomes]
rs12995497	0.94[ASN][1000 genomes]
rs13012108	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs13029601	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13030476	1.00[ASN][1000 genomes]
rs13032709	0.94[ASN][1000 genomes]
rs17686252	0.94[ASN][1000 genomes]
rs1876861	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2175175	0.86[ASN][1000 genomes]
rs2420574	0.97[ASN][1000 genomes]
rs34160446	0.87[ASN][1000 genomes]
rs67630691	0.94[ASN][1000 genomes]
rs7601753	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115862400-115871600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:115869400-115872600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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