Variant report

Variant	rs11903882
Chromosome Location	chr2:20221876-20221877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20221303..20222858-chr2:20269623..20271397,2	MCF-7	breast:
2	chr2:20215693..20217676-chr2:20220990..20223704,2	MCF-7	breast:
3	chr2:20208645..20229804-chr2:20247969..20254330,37	MCF-7	breast:
4	chr2:20215704..20218308-chr2:20221875..20224870,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1016317	0.82[EUR][1000 genomes]
rs1016318	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1028051	0.82[EUR][1000 genomes]
rs10856792	0.82[EUR][1000 genomes]
rs1147110	0.82[EUR][1000 genomes]
rs1147116	0.86[EUR][1000 genomes]
rs12475660	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12478941	0.82[EUR][1000 genomes]
rs16987297	0.82[EUR][1000 genomes]
rs62109425	0.81[EUR][1000 genomes]
rs936509	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11903882	TTC32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20213000-20227200	Weak transcription	Ovary	ovary
2	chr2:20213200-20225000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:20213200-20227000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:20213200-20227000	Weak transcription	Aorta	Aorta
5	chr2:20213400-20227400	Weak transcription	Fetal Kidney	kidney
6	chr2:20213400-20232200	Weak transcription	Right Ventricle	heart
7	chr2:20213600-20227000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:20216400-20227800	Weak transcription	Fetal Intestine Large	intestine
9	chr2:20216400-20228800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:20216800-20224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:20219400-20227000	Weak transcription	Left Ventricle	heart
12	chr2:20220200-20222400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:20220400-20223000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:20221000-20223000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
15	chr2:20221200-20227000	Weak transcription	Liver	Liver
16	chr2:20221400-20222600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr2:20221400-20227000	Weak transcription	A549	lung
18	chr2:20221400-20227200	Weak transcription	Fetal Lung	lung
19	chr2:20221400-20228200	Weak transcription	Fetal Stomach	stomach
20	chr2:20221400-20230000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:20221400-20230000	Weak transcription	Colonic Mucosa	Colon
22	chr2:20221400-20233200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr2:20221400-20249800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr2:20221600-20222600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr2:20221600-20222600	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr2:20221600-20224800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:20221600-20227000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr2:20221600-20227000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr2:20221600-20227000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr2:20221600-20227200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:20221600-20228200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr2:20221800-20227000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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