Variant report

Variant	rs11904038
Chromosome Location	chr2:141737447-141737448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10169349	0.85[EUR][1000 genomes]
rs10169661	0.81[EUR][1000 genomes]
rs10201482	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs10201500	0.85[EUR][1000 genomes]
rs10204167	0.81[EUR][1000 genomes]
rs10204316	0.83[EUR][1000 genomes]
rs10928085	0.85[EUR][1000 genomes]
rs10928086	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs12997805	0.83[EUR][1000 genomes]
rs12998565	0.87[EUR][1000 genomes]
rs1429360	0.85[EUR][1000 genomes]
rs35568890	0.83[EUR][1000 genomes]
rs4954867	1.00[CEU][hapmap]
rs7588680	0.85[EUR][1000 genomes]
rs980286	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs980287	0.84[EUR][1000 genomes]
rs980288	0.88[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875208	chr2:141657878-141795620	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1014208	chr2:141707558-141790148	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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