Variant report

Variant	rs11904536
Chromosome Location	chr2:152504390-152504391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10170273	0.84[EUR][1000 genomes]
rs10178880	0.84[EUR][1000 genomes]
rs10930723	0.85[EUR][1000 genomes]
rs12328501	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12616767	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12620077	0.83[EUR][1000 genomes]
rs13404704	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13428975	0.84[EUR][1000 genomes]
rs4536649	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4564765	0.84[EUR][1000 genomes]
rs4664494	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5005569	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6713162	0.83[EUR][1000 genomes]
rs6735208	0.92[ASN][1000 genomes]
rs7426114	0.84[EUR][1000 genomes]
rs9287990	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv469804	chr2:152404429-152570882	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv482520	chr2:152404429-152570882	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1067832	chr2:152502272-152504773	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152482000-152507600	Strong transcription	Fetal Muscle Trunk	muscle
2	chr2:152489600-152505200	Strong transcription	HSMMtube	muscle
3	chr2:152492000-152506800	Weak transcription	Psoas Muscle	Psoas
4	chr2:152500000-152512200	Weak transcription	Pancreas	Pancrea
5	chr2:152500400-152506600	Strong transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:152502200-152523000	Weak transcription	Placenta	Placenta
7	chr2:152502600-152506400	Strong transcription	Skeletal Muscle Male	skeletal muscle
8	chr2:152503200-152507800	Strong transcription	Fetal Muscle Leg	muscle
9	chr2:152503400-152506600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr2:152503600-152505000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:152503600-152506000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr2:152504000-152504400	ZNF genes & repeats	Primary B cells from cord blood	blood
13	chr2:152504000-152505200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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