Variant report

Variant	rs11904856
Chromosome Location	chr20:14477341-14477342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2224296	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6074751	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055499	chr20:14224873-14848061	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064721	chr20:14384931-14648223	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv833926	chr20:14410153-14572336	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv585442	chr20:14420556-14485947	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1065426	chr20:14426642-14478256	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1059770	chr20:14432394-14549781	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv544187	chr20:14432394-14549781	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv529577	chr20:14434373-14799157	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv3525012	chr20:14475602-14480050	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3525011	chr20:14476552-14479950	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3525010	chr20:14476991-14479385	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv3454110	chr20:14477147-14479065	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv3525019	chr20:14477192-14479068	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv3454105	chr20:14477194-14479041	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	esv3525013	chr20:14477199-14479041	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
16	esv3525014	chr20:14477208-14478994	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3454109	chr20:14477215-14478986	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
18	esv3525017	chr20:14477235-14479005	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
19	esv3525016	chr20:14477242-14479003	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
20	esv3454106	chr20:14477255-14479025	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
21	esv3454107	chr20:14477280-14478960	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
22	esv3525015	chr20:14477290-14478959	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
23	nsv179622	chr20:14477294-14478955	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
24	esv3454111	chr20:14477294-14478957	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
25	esv3525020	chr20:14477294-14478957	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14460800-14477600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:14462600-14488400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:14477200-14477600	Enhancers	HUVEC	blood vessel
4	chr20:14477200-14479200	Enhancers	Hela-S3	cervix

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