Variant report

Variant	rs11906617
Chromosome Location	chr20:22817485-22817486
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:22815412..22817658-chr20:22840004..22842490,2	MCF-7	breast:
2	chr20:22815149..22818148-chr20:22902918..22904475,2	MCF-7	breast:
3	chr20:22817244..22819996-chr20:22821224..22823092,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11908602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7262104	0.80[AFR][1000 genomes]
rs8114322	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv3334	chr20:22773462-22818362	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv510782	chr20:22806573-22907739	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22814800-22817600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr20:22815000-22817600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:22815200-22818400	Enhancers	K562	blood
4	chr20:22815800-22818400	Enhancers	HSMMtube	muscle
5	chr20:22815800-22819000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr20:22816000-22818000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr20:22816000-22818800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:22816200-22818000	Enhancers	Ovary	ovary
9	chr20:22816200-22818800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr20:22816200-22819000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr20:22816200-22819000	Enhancers	NHEK	skin
12	chr20:22816400-22818000	Enhancers	Placenta	Placenta
13	chr20:22816400-22819000	Enhancers	HMEC	breast
14	chr20:22816600-22817800	Enhancers	HSMM	muscle
15	chr20:22816600-22818000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr20:22816600-22818000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr20:22816600-22818600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr20:22816600-22818600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr20:22816800-22817800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr20:22816800-22818000	Enhancers	Lung	lung
21	chr20:22816800-22818000	Enhancers	A549	lung
22	chr20:22816800-22818000	Enhancers	NHDF-Ad	bronchial
23	chr20:22816800-22821800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr20:22817200-22817600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr20:22817200-22818200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr20:22817400-22817600	Bivalent Enhancer	HepG2	liver
27	chr20:22817400-22817800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr20:22817400-22818000	Enhancers	Right Atrium	heart
29	chr20:22817400-22818000	Enhancers	Right Ventricle	heart
30	chr20:22817400-22818000	Enhancers	Spleen	Spleen
31	chr20:22817400-22818000	Enhancers	Hela-S3	cervix

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