Variant report

Variant	rs11906827
Chromosome Location	chr20:22805480-22805481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11905574	1.00[YRI][hapmap]
rs11908526	1.00[AMR][1000 genomes]
rs6048424	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv3334	chr20:22773462-22818362	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22800200-22806600	Weak transcription	Ovary	ovary
2	chr20:22801600-22810200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr20:22802400-22805800	Weak transcription	A549	lung
4	chr20:22803000-22805600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:22803200-22805800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr20:22804000-22806200	Enhancers	HMEC	breast
7	chr20:22804000-22809000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:22804400-22806600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr20:22804800-22806000	Enhancers	NHEK	skin
10	chr20:22804800-22807400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr20:22805000-22809600	Enhancers	Placenta	Placenta
12	chr20:22805200-22805600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr20:22805200-22806200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr20:22805200-22806600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links