Variant report

Variant	rs11910374
Chromosome Location	chr21:41047804-41047805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:41008520..41011159-chr21:41045241..41047961,2	MCF-7	breast:
2	chr21:41039970..41042878-chr21:41046645..41048339,2	K562	blood:
3	chr21:40986802..40989122-chr21:41045623..41048115,2	MCF-7	breast:
4	chr21:41038179..41040629-chr21:41046644..41049063,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11908821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11909950	1.00[EUR][1000 genomes]
rs11910834	1.00[EUR][1000 genomes]
rs60839114	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061454	chr21:40757973-41265404	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1057956	chr21:40907707-41393396	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv544444	chr21:40907707-41393396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1065086	chr21:41034806-41429078	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv544445	chr21:41034806-41429078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41036600-41051200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr21:41038600-41064000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr21:41039600-41050600	Weak transcription	Gastric	stomach
4	chr21:41040800-41048200	Enhancers	Pancreas	Pancrea
5	chr21:41045200-41048000	Enhancers	Fetal Muscle Trunk	muscle
6	chr21:41045400-41048200	Enhancers	Fetal Intestine Small	intestine
7	chr21:41045400-41049200	Enhancers	Fetal Stomach	stomach
8	chr21:41045600-41048200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr21:41045600-41048600	Enhancers	Fetal Intestine Large	intestine
10	chr21:41046400-41049400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr21:41046600-41048000	Enhancers	Colon Smooth Muscle	Colon
12	chr21:41046600-41048400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr21:41046800-41048400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr21:41046800-41058000	Weak transcription	Stomach Mucosa	stomach
15	chr21:41047000-41048200	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr21:41047000-41048600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr21:41047400-41048000	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr21:41047400-41048200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr21:41047400-41048600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr21:41047400-41048600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr21:41047400-41048600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr21:41047400-41049000	Enhancers	Fetal Muscle Leg	muscle
23	chr21:41047400-41049000	Enhancers	Lung	lung
24	chr21:41047600-41048000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr21:41047600-41048000	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr21:41047600-41048000	Enhancers	Left Ventricle	heart
27	chr21:41047600-41048200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr21:41047600-41048200	Enhancers	Placenta	Placenta
29	chr21:41047600-41048200	Flanking Active TSS	Rectal Smooth Muscle	rectum
30	chr21:41047600-41048600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr21:41047600-41048600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr21:41047600-41048600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr21:41047600-41049000	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr21:41047600-41049400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr21:41047600-41049400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr21:41047800-41048200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr21:41047800-41048400	Enhancers	H1 Cell Line	embryonic stem cell
38	chr21:41047800-41048400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr21:41047800-41048600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr21:41047800-41048600	Flanking Active TSS	Fetal Heart	heart
41	chr21:41047800-41048600	Flanking Active TSS	A549	lung
42	chr21:41047800-41048600	Enhancers	HSMMtube	muscle
43	chr21:41047800-41049200	Enhancers	HSMM	muscle

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