Variant report

Variant	rs11911814
Chromosome Location	chr21:17156157-17156158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17104010..17105531-chr21:17155055..17156862,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1989381	0.82[AMR][1000 genomes]
rs2823469	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2823470	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2823472	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2823476	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2823482	0.85[ASN][1000 genomes]
rs2823489	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28725201	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6517609	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6517611	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6517613	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6517648	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6517652	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs722887	0.82[AMR][1000 genomes]
rs7279157	0.82[AMR][1000 genomes]
rs7279170	0.82[AMR][1000 genomes]
rs7283707	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8127158	0.85[AMR][1000 genomes]
rs8134327	0.85[AMR][1000 genomes]
rs9941829	0.85[AMR][1000 genomes]
rs9982479	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9983458	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815433	chr21:17106192-17167353	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1063035	chr21:17154222-17224344	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17130800-17156800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr21:17145800-17156400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr21:17145800-17166600	Weak transcription	Psoas Muscle	Psoas
4	chr21:17148000-17160200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr21:17151600-17160600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr21:17151800-17191000	Weak transcription	NH-A	brain
7	chr21:17152200-17156400	Weak transcription	Brain Substantia Nigra	brain
8	chr21:17153200-17156200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr21:17154400-17156400	Weak transcription	Brain Angular Gyrus	brain
10	chr21:17154600-17156400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr21:17154800-17156400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr21:17154800-17159600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr21:17154800-17161000	Weak transcription	Stomach Mucosa	stomach
14	chr21:17155000-17156600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr21:17155000-17156600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr21:17155000-17156800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr21:17155000-17156800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr21:17155000-17158800	Weak transcription	Colonic Mucosa	Colon
19	chr21:17155000-17160400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr21:17155000-17161200	Weak transcription	Gastric	stomach
21	chr21:17155000-17161200	Weak transcription	HMEC	breast
22	chr21:17155000-17165200	Weak transcription	Brain Hippocampus Middle	brain
23	chr21:17155000-17166600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr21:17155000-17166800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr21:17155000-17171000	Weak transcription	Dnd41	blood
26	chr21:17155000-17179800	Weak transcription	Spleen	Spleen
27	chr21:17155000-17187400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr21:17155000-17188600	Weak transcription	HepG2	liver
29	chr21:17155200-17156200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr21:17155200-17156200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr21:17155200-17156200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr21:17155200-17156400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr21:17155200-17156600	Weak transcription	Esophagus	oesophagus
34	chr21:17155200-17157000	Weak transcription	Lung	lung
35	chr21:17155200-17158000	Weak transcription	Ovary	ovary
36	chr21:17155200-17158000	Weak transcription	Pancreas	Pancrea
37	chr21:17155200-17159400	Weak transcription	HUVEC	blood vessel
38	chr21:17155200-17160400	Weak transcription	Aorta	Aorta
39	chr21:17155200-17160600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr21:17155200-17160600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr21:17155200-17160600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr21:17155200-17160800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr21:17155200-17160800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr21:17155200-17160800	Weak transcription	Hela-S3	cervix
45	chr21:17155200-17160800	Weak transcription	NHDF-Ad	bronchial
46	chr21:17155200-17161000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr21:17155200-17161000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr21:17155200-17161000	Weak transcription	NHLF	lung
49	chr21:17155200-17161200	Weak transcription	Adipose Nuclei	Adipose
50	chr21:17155200-17161200	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links