Variant report

Variant	rs11912471
Chromosome Location	chr22:31066876-31066877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs35032582	1.00[EUR][1000 genomes]
rs57114503	1.00[EUR][1000 genomes]
rs72558390	1.00[EUR][1000 genomes]
rs7286107	1.00[EUR][1000 genomes]
rs7288765	1.00[EUR][1000 genomes]
rs73396364	1.00[EUR][1000 genomes]
rs73398315	1.00[EUR][1000 genomes]
rs73881489	1.00[EUR][1000 genomes]
rs8137501	1.00[EUR][1000 genomes]
rs8141486	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv834175	chr22:30976624-31089545	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31064800-31068200	Weak transcription	HUVEC	blood vessel
2	chr22:31064800-31069200	Weak transcription	Spleen	Spleen
3	chr22:31064800-31070000	Weak transcription	K562	blood
4	chr22:31064800-31075400	Weak transcription	Brain Hippocampus Middle	brain
5	chr22:31065000-31068200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr22:31065000-31068400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links