Variant report

Variant	rs1191302
Chromosome Location	chr3:120904946-120904947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10212452	0.82[AFR][1000 genomes]
rs1191289	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1191291	0.84[AFR][1000 genomes]
rs1191292	0.83[ASN][1000 genomes]
rs1191294	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1191298	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1191299	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1191303	0.83[AFR][1000 genomes]
rs1191307	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1191308	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1211857	0.83[ASN][1000 genomes]
rs13318249	0.81[ASN][1000 genomes]
rs1504538	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1518597	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16832125	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1795391	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1795393	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs191438	0.82[AFR][1000 genomes]
rs1920547	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2331525	0.82[AFR][1000 genomes]
rs2331538	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2331641	0.80[ASN][1000 genomes]
rs2331642	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2679284	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2679286	0.85[AFR][1000 genomes]
rs2701052	0.84[ASN][1000 genomes]
rs338974	0.84[AFR][1000 genomes]
rs338978	0.82[AFR][1000 genomes]
rs338999	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3908117	0.81[ASN][1000 genomes]
rs4676710	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6781737	0.80[ASN][1000 genomes]
rs6782749	0.81[ASN][1000 genomes]
rs7637100	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7648200	0.81[AFR][1000 genomes]
rs9827406	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869548	chr3:120320731-121076337	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916869	chr3:120360281-120973169	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1005275	chr3:120700604-121102735	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1008441	chr3:120730017-121102735	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536709	chr3:120730017-121102735	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1005525	chr3:120749594-121027161	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1012777	chr3:120883846-120974864	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120897800-120914600	Weak transcription	Ovary	ovary

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