Variant report

Variant	rs11913376
Chromosome Location	chr22:28008952-28008953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11912045	0.84[ASN][1000 genomes]
rs11912678	0.84[ASN][1000 genomes]
rs12158772	0.96[ASN][1000 genomes]
rs12158861	0.96[ASN][1000 genomes]
rs12159548	0.96[ASN][1000 genomes]
rs12160605	0.92[ASN][1000 genomes]
rs16985163	1.00[AMR][1000 genomes]
rs2008329	1.00[AMR][1000 genomes]
rs5762216	1.00[AMR][1000 genomes]
rs5762219	1.00[AMR][1000 genomes]
rs5762223	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv834168	chr22:27859692-28061869	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv588877	chr22:27930080-28094845	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv914956	chr22:27993597-28050390	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27997200-28009800	Weak transcription	Right Atrium	heart
2	chr22:28005600-28026200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:28007000-28009400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:28007000-28010000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr22:28007000-28010200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr22:28007000-28011200	Enhancers	Primary hematopoietic stem cells	blood
7	chr22:28007000-28011400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr22:28007600-28009400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr22:28007600-28009600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr22:28007800-28009600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr22:28008400-28010600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr22:28008600-28009000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr22:28008600-28009000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr22:28008600-28009000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr22:28008600-28009200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr22:28008600-28009400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
17	chr22:28008800-28009200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr22:28008800-28012400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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