Variant report

Variant	rs11913494
Chromosome Location	chr22:27618363-27618364
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:27614255..27616554-chr22:27616988..27619608,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12165374	1.00[ASN][1000 genomes]
rs12329959	0.92[ASN][1000 genomes]
rs1555023	1.00[ASN][1000 genomes]
rs16983866	1.00[ASN][1000 genomes]
rs16983868	1.00[ASN][1000 genomes]
rs16983873	1.00[ASN][1000 genomes]
rs16983900	1.00[ASN][1000 genomes]
rs16986784	1.00[ASN][1000 genomes]
rs16986786	1.00[ASN][1000 genomes]
rs2176657	1.00[ASN][1000 genomes]
rs2176658	1.00[ASN][1000 genomes]
rs4141434	1.00[ASN][1000 genomes]
rs4141435	1.00[ASN][1000 genomes]
rs56966018	1.00[ASN][1000 genomes]
rs6005337	1.00[ASN][1000 genomes]
rs62223778	1.00[ASN][1000 genomes]
rs62223812	1.00[ASN][1000 genomes]
rs62223814	1.00[ASN][1000 genomes]
rs62223815	1.00[ASN][1000 genomes]
rs760605	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917333	chr22:26931825-27692024	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	142 gene(s)	inside rSNPs	diseases
2	esv34168	chr22:27289097-27678031	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1064910	chr22:27609597-27648408	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27606800-27620000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:27615200-27619200	Weak transcription	Ovary	ovary
3	chr22:27616600-27619400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr22:27616600-27619400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr22:27617000-27618600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr22:27617000-27619200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr22:27617000-27619800	Weak transcription	A549	lung
8	chr22:27617000-27621000	Weak transcription	Fetal Intestine Large	intestine
9	chr22:27617200-27619400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr22:27617200-27619600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr22:27618000-27619600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr22:27618000-27619600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr22:27618200-27618600	ZNF genes & repeats	NH-A	brain
14	chr22:27618200-27619400	ZNF genes & repeats	Osteobl	bone

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