Variant report

Variant	rs11915143
Chromosome Location	chr3:133985901-133985902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1131262	0.88[ASN][1000 genomes]
rs11707763	0.99[ASN][1000 genomes]
rs35111284	0.83[EUR][1000 genomes]
rs35322473	0.94[ASN][1000 genomes]
rs35432681	0.81[EUR][1000 genomes]
rs3890774	0.86[ASN][1000 genomes]
rs4072180	0.80[ASN][1000 genomes]
rs4077643	0.83[EUR][1000 genomes]
rs4404422	0.84[EUR][1000 genomes]
rs4682664	0.87[ASN][1000 genomes]
rs4682666	0.87[ASN][1000 genomes]
rs4682668	0.88[ASN][1000 genomes]
rs4682669	0.88[ASN][1000 genomes]
rs55689708	0.90[ASN][1000 genomes]
rs56073423	0.88[ASN][1000 genomes]
rs6439465	0.83[ASN][1000 genomes]
rs6439466	0.83[ASN][1000 genomes]
rs6650893	0.99[ASN][1000 genomes]
rs6762690	0.83[ASN][1000 genomes]
rs6776502	0.80[ASN][1000 genomes]
rs6780295	0.99[ASN][1000 genomes]
rs6783086	0.82[EUR][1000 genomes]
rs6808085	0.88[ASN][1000 genomes]
rs7355922	0.98[ASN][1000 genomes]
rs7609611	0.88[ASN][1000 genomes]
rs7622046	0.88[ASN][1000 genomes]
rs9809556	0.83[EUR][1000 genomes]
rs9818714	0.87[ASN][1000 genomes]
rs9823873	0.87[ASN][1000 genomes]
rs9825808	0.88[ASN][1000 genomes]
rs9827728	0.94[ASN][1000 genomes]
rs9832732	0.88[ASN][1000 genomes]
rs9839609	0.82[EUR][1000 genomes]
rs9839819	0.88[ASN][1000 genomes]
rs9853568	0.87[ASN][1000 genomes]
rs9856298	0.87[ASN][1000 genomes]
rs9856792	0.88[ASN][1000 genomes]
rs9858069	0.88[ASN][1000 genomes]
rs9858450	0.85[ASN][1000 genomes]
rs9858707	0.88[ASN][1000 genomes]
rs9859176	0.81[EUR][1000 genomes]
rs9859680	0.81[EUR][1000 genomes]
rs9865808	0.83[EUR][1000 genomes]
rs9880098	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133981000-133987000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:133985400-133986000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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