Variant report

Variant	rs11915198
Chromosome Location	chr3:109451120-109451121
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11922644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12488702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34557596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460815	chr3:109447463-109484302	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv591269	chr3:109447463-109496029	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109448600-109452000	Weak transcription	Pancreas	Pancrea
2	chr3:109450600-109452000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:109451000-109451400	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr3:109451000-109451400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:109451000-109451400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr3:109451000-109451600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:109451000-109451600	Enhancers	Dnd41	blood
8	chr3:109451000-109451800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:109451000-109452200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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