Variant report

Variant	rs11916128
Chromosome Location	chr3:76111872-76111873
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs62267245	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62267251	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62268881	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62268882	1.00[EUR][1000 genomes]
rs6778360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795962	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876995	chr3:76015252-76114539	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1012705	chr3:76047819-76276542	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv998038	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv536591	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1007586	chr3:76053664-76280612	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv979847	chr3:76058868-76143057	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv999868	chr3:76068393-76274977	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv869827	chr3:76074846-76142916	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv432458	chr3:76077110-76119510	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2757876	chr3:76077290-76167295	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv876996	chr3:76094221-76131251	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1004976	chr3:76098108-76218646	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:76109800-76113400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:76110400-76112200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:76111000-76113400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:76111400-76113200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:76111600-76113600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:76111600-76113600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:76111800-76112000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:76111800-76112000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:76111800-76112400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:76111800-76113000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:76111800-76113000	Enhancers	Adipose Nuclei	Adipose
12	chr3:76111800-76113000	Enhancers	HMEC	breast
13	chr3:76111800-76113000	Enhancers	NHEK	skin
14	chr3:76111800-76113200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr3:76111800-76113200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr3:76111800-76113200	Enhancers	NH-A	brain
17	chr3:76111800-76113600	Enhancers	Fetal Heart	heart
18	chr3:76111800-76115200	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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