Variant report

Variant	rs11916355
Chromosome Location	chr3:160654131-160654132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160646068..160648329-chr3:160652123..160654402,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11711152	0.84[EUR][1000 genomes]
rs11713093	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11718966	0.84[EUR][1000 genomes]
rs13060718	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13071999	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13073059	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1345156	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447610	0.85[EUR][1000 genomes]
rs1447622	0.86[EUR][1000 genomes]
rs1562464	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16831563	0.84[EUR][1000 genomes]
rs1839016	0.86[EUR][1000 genomes]
rs1868105	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1868107	0.84[EUR][1000 genomes]
rs2044571	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4679920	0.84[EUR][1000 genomes]
rs6441337	0.84[EUR][1000 genomes]
rs6441338	0.84[EUR][1000 genomes]
rs66872845	0.90[EUR][1000 genomes]
rs6768115	0.84[EUR][1000 genomes]
rs6774725	0.86[EUR][1000 genomes]
rs6801444	0.86[EUR][1000 genomes]
rs7624185	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7641892	0.87[EUR][1000 genomes]
rs935497	0.87[EUR][1000 genomes]
rs9812507	0.82[EUR][1000 genomes]
rs9832109	0.82[EUR][1000 genomes]
rs9844267	0.91[EUR][1000 genomes]
rs9845943	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9857482	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9860537	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9871801	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11916355	B3GALNT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160644800-160654400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:160653600-160654400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr3:160653600-160659000	Weak transcription	Liver	Liver
4	chr3:160654000-160657800	Weak transcription	Placenta	Placenta

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