Variant report

Variant	rs11916363
Chromosome Location	chr3:53650988-53650989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11721212	0.85[YRI][hapmap]
rs11918357	1.00[AMR][1000 genomes]
rs11926797	1.00[AMR][1000 genomes]
rs56942924	1.00[AMR][1000 genomes]
rs60025539	1.00[AMR][1000 genomes]
rs60793632	1.00[AMR][1000 genomes]
rs61001001	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53645400-53651000	Weak transcription	Lung	lung
2	chr3:53646800-53651000	Weak transcription	Spleen	Spleen
3	chr3:53648800-53651600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:53649600-53651200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:53650000-53651000	Bivalent Enhancer	Adipose Nuclei	Adipose
6	chr3:53650000-53651200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:53650000-53651200	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:53650000-53651200	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr3:53650000-53651400	Enhancers	Fetal Kidney	kidney
10	chr3:53650000-53651400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr3:53650000-53652000	Enhancers	Fetal Lung	lung
12	chr3:53650200-53651000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:53650200-53651200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr3:53650200-53651400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:53650200-53651400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:53650200-53651400	Enhancers	Fetal Muscle Leg	muscle
17	chr3:53650200-53651400	Enhancers	Placenta	Placenta
18	chr3:53650200-53653200	Strong transcription	Fetal Intestine Small	intestine
19	chr3:53650400-53651000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:53650400-53651400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:53650600-53651000	Enhancers	Duodenum Mucosa	Duodenum
22	chr3:53650600-53651200	Enhancers	Fetal Brain Male	brain
23	chr3:53650800-53651000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr3:53650800-53651200	Enhancers	Fetal Intestine Large	intestine
25	chr3:53650800-53651400	Enhancers	Fetal Stomach	stomach
26	chr3:53650800-53651800	Enhancers	Brain Angular Gyrus	brain
27	chr3:53650800-53653200	Enhancers	Colonic Mucosa	Colon
28	chr3:53650800-53653600	Enhancers	Rectal Mucosa Donor 31	rectum

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