Variant report

Variant	rs11916579
Chromosome Location	chr3:133479059-133479060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs41296602	0.87[AFR][1000 genomes]
rs8177282	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv877508	chr3:133476852-133482662	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133465600-133483000	Weak transcription	Brain Germinal Matrix	brain
2	chr3:133472400-133480600	Strong transcription	Brain Angular Gyrus	brain
3	chr3:133473400-133480800	Strong transcription	Brain Inferior Temporal Lobe	brain
4	chr3:133474000-133480200	Strong transcription	Brain Hippocampus Middle	brain
5	chr3:133475000-133487000	Weak transcription	Fetal Brain Male	brain
6	chr3:133475200-133480800	Strong transcription	HepG2	liver
7	chr3:133475200-133482800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:133477000-133490400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:133477200-133480400	Strong transcription	Brain Anterior Caudate	brain
10	chr3:133477800-133480800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:133478200-133480000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:133478600-133480400	Strong transcription	Brain Substantia Nigra	brain
13	chr3:133478800-133479400	Weak transcription	Adipose Nuclei	Adipose
14	chr3:133478800-133479600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:133478800-133482600	Weak transcription	Left Ventricle	heart
16	chr3:133479000-133480600	Strong transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links