Variant report

Variant	rs11917220
Chromosome Location	chr3:134058662-134058663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134031213..134035337-chr3:134058178..134060901,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240006	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11926951	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134035000-134058800	Weak transcription	Liver	Liver
2	chr3:134042000-134060800	Enhancers	Placenta	Placenta
3	chr3:134049200-134060800	Enhancers	Fetal Intestine Large	intestine
4	chr3:134050600-134060400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:134050800-134061000	Weak transcription	Fetal Brain Female	brain
6	chr3:134051400-134058800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:134051400-134058800	Weak transcription	Fetal Kidney	kidney
8	chr3:134052800-134058800	Enhancers	HepG2	liver
9	chr3:134053000-134061200	Enhancers	Adipose Nuclei	Adipose
10	chr3:134054000-134059600	Weak transcription	Colonic Mucosa	Colon
11	chr3:134054000-134064200	Weak transcription	Aorta	Aorta
12	chr3:134054200-134060200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:134054200-134069800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:134054400-134069400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:134054600-134061000	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:134055200-134061400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:134055600-134059600	Weak transcription	HSMM	muscle
18	chr3:134055800-134058800	Weak transcription	NHLF	lung
19	chr3:134055800-134059400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:134055800-134059600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:134055800-134071000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:134056000-134058800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:134056000-134058800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:134056200-134058800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:134056200-134066600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:134056400-134059000	Weak transcription	HSMMtube	muscle
27	chr3:134056400-134059600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:134056400-134059600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:134056400-134064800	Weak transcription	Ovary	ovary
30	chr3:134056600-134059600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:134056600-134059800	Weak transcription	HMEC	breast
32	chr3:134056600-134060000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:134056600-134060000	Weak transcription	NHEK	skin
34	chr3:134056800-134058800	Weak transcription	Right Atrium	heart
35	chr3:134056800-134058800	Weak transcription	Osteobl	bone
36	chr3:134056800-134059000	Weak transcription	Left Ventricle	heart
37	chr3:134057000-134059000	Weak transcription	A549	lung
38	chr3:134057200-134059200	Enhancers	Fetal Muscle Trunk	muscle
39	chr3:134057200-134060200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr3:134057200-134067400	Weak transcription	Fetal Heart	heart
41	chr3:134057400-134059800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:134057400-134060800	Enhancers	Fetal Intestine Small	intestine
43	chr3:134057600-134063400	Weak transcription	Pancreas	Pancrea
44	chr3:134058000-134060800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:134058200-134059000	Enhancers	Lung	lung
46	chr3:134058200-134060400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:134058200-134060400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr3:134058200-134061200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr3:134058400-134059800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:134058400-134061000	Enhancers	NHDF-Ad	bronchial

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