Variant report

Variant	rs11919044
Chromosome Location	chr3:194783529-194783530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:194782723..194784789-chr3:194796384..194799142,2	MCF-7	breast:
2	chr3:194783220..194785678-chr3:194823694..194826162,2	K562	blood:
3	chr3:194783239..194785718-chr3:194791860..194793438,2	MCF-7	breast:
4	chr3:194774148..194775678-chr3:194782165..194785109,2	MCF-7	breast:
5	chr3:194778235..194781013-chr3:194783176..194785449,3	MCF-7	breast:
6	chr3:194559695..194562228-chr3:194782083..194784919,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs3988215	0.82[EUR][1000 genomes]
rs55781130	0.81[ASN][1000 genomes]
rs55889329	0.80[ASN][1000 genomes]
rs55958301	0.81[ASN][1000 genomes]
rs56180618	0.81[ASN][1000 genomes]
rs56324901	0.81[ASN][1000 genomes]
rs56334245	0.81[ASN][1000 genomes]
rs56343680	0.81[ASN][1000 genomes]
rs57087537	0.81[ASN][1000 genomes]
rs61376994	0.81[ASN][1000 genomes]
rs66488008	0.80[ASN][1000 genomes]
rs6780281	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6780283	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6794037	0.80[ASN][1000 genomes]
rs6794986	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6797948	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs68056636	0.81[EUR][1000 genomes]
rs7629969	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948797	chr3:194232753-194789163	Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
2	nsv1007697	chr3:194554814-195009930	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
3	nsv536873	chr3:194554814-195009930	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv997779	chr3:194687093-194885936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv536874	chr3:194687093-194885936	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1009796	chr3:194737333-195124248	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
7	esv1813153	chr3:194754532-194851746	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv1847174	chr3:194763601-194792415	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv592968	chr3:194775336-194787534	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv878136	chr3:194779412-194845226	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv21116	chr3:194781127-194785923	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:194774200-194787400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:194776200-194787800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:194779000-194808000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:194780000-194788800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr3:194780200-194783600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:194780200-194784000	Weak transcription	Esophagus	oesophagus
7	chr3:194780200-194784200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:194780200-194784200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:194780200-194800000	Weak transcription	Right Atrium	heart
10	chr3:194780400-194784000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:194780400-194784400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:194780400-194788600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr3:194780600-194783600	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:194780600-194784200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:194780600-194784200	Weak transcription	Fetal Thymus	thymus
16	chr3:194780600-194788600	Weak transcription	HUVEC	blood vessel
17	chr3:194780600-194788800	Weak transcription	Lung	lung
18	chr3:194781000-194783600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:194781000-194783600	Bivalent Enhancer	HepG2	liver
20	chr3:194781000-194788600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr3:194781000-194789400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr3:194781000-194808000	Weak transcription	Colonic Mucosa	Colon
23	chr3:194781200-194783600	Weak transcription	Fetal Intestine Large	intestine
24	chr3:194781200-194783800	Weak transcription	Fetal Intestine Small	intestine
25	chr3:194781600-194786200	Enhancers	Fetal Stomach	stomach
26	chr3:194781800-194783800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr3:194781800-194784000	Weak transcription	Left Ventricle	heart
28	chr3:194782000-194783600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:194782000-194785600	Enhancers	Spleen	Spleen
30	chr3:194782000-194788600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:194782000-194790000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:194782200-194784200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr3:194782600-194786200	Enhancers	Fetal Muscle Trunk	muscle
34	chr3:194783000-194784600	Enhancers	Stomach Smooth Muscle	stomach
35	chr3:194783200-194783600	Weak transcription	Right Ventricle	heart
36	chr3:194783200-194783600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:194783400-194783600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr3:194783400-194784200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:194783400-194785400	Enhancers	Fetal Heart	heart
40	chr3:194783400-194789800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links