Variant report

Variant	rs11920864
Chromosome Location	chr3:178809865-178809866
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:178809745..178812576-chr3:178816052..178819486,3	K562	blood:
2	chr3:178809805..178811963-chr3:178818748..178821096,2	K562	blood:
3	chr3:178809532..178812576-chr3:178813469..178818061,5	K562	blood:
4	chr3:178796614..178798770-chr3:178807942..178810432,2	K562	blood:
5	chr3:178807668..178809207-chr3:178809551..178811672,2	K562	blood:

Variant related genes	Relation type
ENSG00000200616	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1170672	1.00[JPT][hapmap]
rs11706842	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs11922631	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1976765	0.80[EUR][1000 genomes]
rs55933053	0.80[EUR][1000 genomes]
rs56095736	0.83[EUR][1000 genomes]
rs56285562	0.90[EUR][1000 genomes]
rs56372555	0.80[EUR][1000 genomes]
rs56748382	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59340081	0.80[EUR][1000 genomes]
rs60273951	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771313	0.83[EUR][1000 genomes]
rs6792189	0.80[EUR][1000 genomes]
rs6797304	0.80[EUR][1000 genomes]
rs73187218	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73187223	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73187225	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7628855	0.82[CEU][hapmap]
rs7638525	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7641889	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs7651371	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7651373	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs938752	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs9631497	0.80[EUR][1000 genomes]
rs9844270	0.83[EUR][1000 genomes]
rs9877812	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv461026	chr3:178661814-178886609	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv592649	chr3:178661814-178886609	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv1792927	chr3:178734558-178877169	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	esv1841799	chr3:178739594-178884337	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178808600-178810000	Enhancers	Dnd41	blood
2	chr3:178809200-178812400	Enhancers	HSMM	muscle
3	chr3:178809800-178810400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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