Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11707783	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11711589	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11715442	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13064036	0.92[ASN][1000 genomes]
rs13072228	0.82[ASN][1000 genomes]
rs13075410	0.90[ASN][1000 genomes]
rs1879996	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs212034	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2630189	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2630191	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2736794	0.91[ASN][1000 genomes]
rs2736796	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2736802	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3772475	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3772476	0.93[ASN][1000 genomes]
rs3772477	0.97[ASN][1000 genomes]
rs3772480	0.85[ASN][1000 genomes]
rs3772482	0.90[ASN][1000 genomes]
rs6446100	0.95[ASN][1000 genomes]
rs6446101	0.87[ASN][1000 genomes]
rs6446102	0.88[ASN][1000 genomes]
rs6446103	0.88[ASN][1000 genomes]
rs6446104	0.88[ASN][1000 genomes]
rs7626003	0.90[ASN][1000 genomes]
rs7629424	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs802775	0.92[ASN][1000 genomes]
rs9819930	0.81[EUR][1000 genomes]
rs9865672	0.95[ASN][1000 genomes]
rs9880771	0.99[ASN][1000 genomes]
rs9881070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59943200-59964400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr3:59943400-59951600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:59943800-59959600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:59946400-59951600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr3:59946400-59958200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:59946600-59951600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:59947600-59951800	Weak transcription	Primary T cells from cord blood	blood
8	chr3:59948000-59957600	Weak transcription	Dnd41	blood

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