Variant report

Variant	rs11922451
Chromosome Location	chr3:113270952-113270953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:113254930..113255834-chr3:113270582..113271304,2	MCF-7	breast:
2	chr3:113233651..113236084-chr3:113269132..113272131,7	MCF-7	breast:
3	chr3:113218579..113221300-chr3:113269113..113271776,2	MCF-7	breast:
4	chr3:113234741..113235548-chr3:113270495..113271038,2	MCF-7	breast:
5	chr3:113232632..113237183-chr3:113263393..113272581,15	MCF-7	breast:
6	chr3:113254346..113256305-chr3:113270288..113271550,7	MCF-7	breast:
7	chr3:113267576..113271162-chr3:113272689..113275342,3	K562	blood:
8	chr3:113270774..113272504-chr3:113274583..113276663,3	MCF-7	breast:
9	chr3:113212673..113214541-chr3:113270155..113272602,14	MCF-7	breast:
10	chr3:113264597..113268411-chr3:113270878..113272522,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163611	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1463639	0.85[YRI][hapmap]
rs16845109	0.85[YRI][hapmap]
rs16845110	0.85[YRI][hapmap]
rs16860995	0.85[YRI][hapmap]
rs16861059	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113255400-113278800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:113255600-113274800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:113255600-113278400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:113256000-113279000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:113257200-113277400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:113257200-113283400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:113261200-113276200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:113262400-113272200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:113262600-113278800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr3:113263800-113273000	Weak transcription	Primary T cells from cord blood	blood
11	chr3:113265000-113271600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:113265400-113271400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr3:113266800-113276400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:113267400-113276200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:113267400-113278400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:113268200-113279400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr3:113269200-113276600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr3:113269400-113276200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:113270000-113271600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr3:113270600-113271400	Enhancers	Stomach Mucosa	stomach
21	chr3:113270800-113271000	Flanking Active TSS	HepG2	liver
22	chr3:113270800-113272000	Genic enhancers	GM12878-XiMat	blood

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