The 2.0 version of rSNPBase
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Variant report
Variant
rs11923767
Chromosome Location
chr3:86082367-86082368
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
No data
No data
No data
No data
Extended variants information (count: 6 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:2)
rs_ID
r
2
[population]
rs12485644
1.00[AFR][1000 genomes]
rs7623927
1.00[YRI][hapmap]
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv532629
chr3:85763873-86608579
Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription
TF binding regionCpG islandChromatin interactive regionlncRNA
14 gene(s)
inside rSNPs
diseases
2
nsv877112
chr3:85964737-86083716
Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription
TF binding regionCpG islandChromatin interactive regionlncRNA
2 gene(s)
inside rSNPs
n/a
3
esv3331531
chr3:86080562-86084960
Inactive region
TF binding region
1 gene(s)
inside rSNPs
n/a
4
esv3337065
chr3:86082062-86084010
Inactive region
TF binding region
1 gene(s)
inside rSNPs
n/a
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links