Variant report

Variant	rs11924327
Chromosome Location	chr3:118995659-118995660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11927863	1.00[MEX][hapmap]
rs13327592	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57065523	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57447123	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956737	0.83[AMR][1000 genomes]
rs9824383	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118994200-118995800	Enhancers	Primary T cells from cord blood	blood
2	chr3:118994400-118995800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:118994400-118995800	Enhancers	Left Ventricle	heart
4	chr3:118994400-118996400	Enhancers	Lung	lung
5	chr3:118994600-118996400	Enhancers	Placenta	Placenta
6	chr3:118994800-118997800	Weak transcription	Fetal Heart	heart
7	chr3:118994800-118998000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:118994800-118998000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:118995000-118997000	Weak transcription	Right Atrium	heart
10	chr3:118995000-118997800	Weak transcription	A549	lung
11	chr3:118995200-118997600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:118995600-118995800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:118995600-118996000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:118995600-118997600	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links