Variant report

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141028623..141032743-chr3:141076399..141079995,4	K562	blood:
2	chr3:141076150..141079079-chr3:141205121..141206716,2	K562	blood:
3	chr3:141078586..141083082-chr3:141083147..141089245,7	K562	blood:
4	chr3:141075490..141079205-chr3:141079286..141082614,3	K562	blood:
5	chr3:141078561..141083432-chr3:141083715..141088682,12	MCF-7	breast:
6	chr3:141078321..141083296-chr3:141083518..141088899,11	MCF-7	breast:
7	chr3:141069302..141073893-chr3:141077867..141081931,7	K562	blood:
8	chr3:141071211..141074969-chr3:141075130..141079679,8	K562	blood:
9	chr3:141078564..141081479-chr3:141173622..141176571,3	MCF-7	breast:
10	chr3:141050275..141052450-chr3:141077492..141079872,2	MCF-7	breast:
11	chr3:141074101..141082527-chr3:141083011..141090165,19	K562	blood:
12	chr3:141078410..141082494-chr3:141170544..141172496,3	MCF-7	breast:
13	chr3:141030626..141031237-chr3:141078462..141078974,2	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11925260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55675250	0.93[EUR][1000 genomes]
rs56199815	1.00[EUR][1000 genomes]
rs56259972	0.93[EUR][1000 genomes]
rs56342944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795398	1.00[EUR][1000 genomes]
rs73869599	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141056400-141079400	Weak transcription	A549	lung
2	chr3:141064600-141080400	Weak transcription	Colonic Mucosa	Colon
3	chr3:141065800-141085200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:141066400-141079600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:141066600-141079200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:141066800-141079000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:141067800-141079400	Weak transcription	NHLF	lung
8	chr3:141070600-141079000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:141073600-141079000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:141074600-141079600	Weak transcription	Placenta	Placenta
11	chr3:141075200-141079400	Weak transcription	HUVEC	blood vessel
12	chr3:141075400-141079400	Weak transcription	HepG2	liver
13	chr3:141075400-141079600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:141075600-141079000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:141077000-141079800	Enhancers	K562	blood
16	chr3:141077600-141085400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:141078200-141079200	Genic enhancers	Fetal Intestine Large	intestine
18	chr3:141078200-141079600	Genic enhancers	Fetal Intestine Small	intestine
19	chr3:141078200-141079800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:141078400-141079800	Weak transcription	Right Atrium	heart

Quick Search: