Variant report

Variant	rs11924925
Chromosome Location	chr3:140288624-140288625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10755093	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10804675	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10804676	0.91[ASN][1000 genomes]
rs10935387	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11714465	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11924952	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12494698	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs347973	0.82[EUR][1000 genomes]
rs347975	0.82[EUR][1000 genomes]
rs6775380	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6799764	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6803516	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv34489	chr3:140009020-140469302	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2757012	chr3:140009220-140460228	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv870185	chr3:140265153-140395673	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140279600-140289600	Weak transcription	Fetal Brain Female	brain
2	chr3:140286200-140292800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:140286200-140295000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:140287600-140289000	Enhancers	Psoas Muscle	Psoas
5	chr3:140287800-140289000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr3:140288200-140289600	Weak transcription	Left Ventricle	heart
7	chr3:140288200-140289600	Weak transcription	Right Atrium	heart
8	chr3:140288200-140290800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:140288400-140289800	Weak transcription	Brain Anterior Caudate	brain
10	chr3:140288400-140290400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:140288400-140290800	Weak transcription	Ovary	ovary
12	chr3:140288400-140290800	Weak transcription	Right Ventricle	heart
13	chr3:140288400-140291400	Weak transcription	HSMMtube	muscle
14	chr3:140288400-140291600	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:140288400-140291800	Weak transcription	Pancreas	Pancrea
16	chr3:140288600-140291600	Weak transcription	Liver	Liver
17	chr3:140288600-140291800	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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