Variant report

Variant	rs11926707
Chromosome Location	chr3:46925539-46925540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr3:46924703-46925545	IMR90	lung:	n/a	chr3:46924951-46924961 chr3:46924948-46924957

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:46925524-46925574	GM12891	blood:	n/a
2	chr3:46925524-46925574	BJ	skin:	n/a
3	chr3:46925524-46925574	NT2-D1	testis:	n/a
4	chr3:46925524-46925574	PFSK-1	brain:	n/a
5	chr3:46925524-46925574	HEEpiC	esophagus:	n/a
6	chr3:46925524-46925574	AG04450	lung:	fetal
7	chr3:46925524-46925574	HCT-116	colon:	n/a
8	chr3:46925524-46925574	AoSMC	blood vessel:	n/a
9	chr3:46925524-46925574	PrEC	prostate:	n/a
10	chr3:46925524-46925574	HRCEpiC	kidney:	n/a
11	chr3:46925524-46925574	AG10803	skin:	n/a
12	chr3:46925524-46925574	HPAEpiC	pulmonary alveolar:	n/a
13	chr3:46925524-46925574	LNCaP	prostate:	n/a
14	chr3:46925524-46925574	ECC-1	luminal epithelium:	n/a
15	chr3:46925524-46925574	U87	brain:	n/a
16	chr3:46925524-46925574	GM19239	blood:	n/a
17	chr3:46925524-46925574	NB4	blood:	n/a
18	chr3:46925524-46925574	K562	blood:	n/a
19	chr3:46925524-46925574	AG04449	skin:	fetal
20	chr3:46925524-46925574	HCF	heart:	n/a
21	chr3:46925524-46925574	NHDF-neo	bronchial:	n/a
22	chr3:46925524-46925574	ovcar-3	ovarian:	n/a
23	chr3:46925524-46925574	HMEC	breast:	n/a
24	chr3:46925524-46925574	Hela-S3	cervix:	n/a
25	chr3:46925524-46925574	HAEpiC	amniotic membrane:	n/a
26	chr3:46925524-46925574	Hepatocyte	liver:	n/a
27	chr3:46925524-46925574	H1-hESC	embryonic stem cell:	embryo
28	chr3:46925524-46925574	SK-N-SH	brain:	n/a
29	chr3:46925524-46925574	HL-60	blood:	n/a
30	chr3:46925524-46925574	HIPEpiC	eye:	n/a
31	chr3:46925524-46925574	SK-N-MC	brain:	n/a
32	chr3:46925524-46925574	CMK	blood:	n/a
33	chr3:46925524-46925574	HepG2	liver:	n/a
34	chr3:46925524-46925574	IMR90	lung:	fetal
35	chr3:46925524-46925574	NH-A	brain:	n/a
36	chr3:46925524-46925574	PANC-1	pancreas:	n/a
37	chr3:46925524-46925574	SAEC	small airway:	n/a
38	chr3:46925524-46925574	GM06990	blood:	n/a
39	chr3:46925524-46925574	MCF-7	breast:	n/a
40	chr3:46925524-46925574	Jurkat	blood:	n/a
41	chr3:46925524-46925574	NHBE	bronchial:	n/a
42	chr3:46925524-46925574	HRPEpiC	eye:	n/a
43	chr3:46925524-46925574	GM12878	blood:	n/a
44	chr3:46925524-46925574	SK-N-SH_RA	brain:	n/a
45	chr3:46925524-46925574	RPTEC	kidney:	n/a
46	chr3:46925524-46925574	T-47D	breast:	n/a
47	chr3:46925524-46925574	HRE	kidney:	n/a
48	chr3:46925524-46925574	A549	lung:	n/a
49	chr3:46925524-46925574	MCF10A-Er-Src	breast:	n/a
50	chr3:46925524-46925574	SKMC	muscle:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:46733801..46735413-chr3:46924430..46926212,2	MCF-7	breast:
2	chr3:46917376..46920621-chr3:46922888..46926605,5	K562	blood:
3	chr3:46923291..46931131-chr3:46931662..46935716,9	K562	blood:
4	chr3:46924894..46926955-chr3:46938452..46941314,2	K562	blood:

No data

Variant related genes	Relation type
MYL3	TF binding region
MYL3	CpG island
ENSG00000160801	Chromatin interaction
ENSG00000178038	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6442040	0.84[CEU][hapmap]
rs9855938	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007449	chr3:46652343-46986578	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv536554	chr3:46652343-46986578	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv2757869	chr3:46680452-46972489	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv2759147	chr3:46680452-46972489	Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv536558	chr3:46706571-47024756	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv915922	chr3:46768104-47009805	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv590205	chr3:46852679-46929546	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1003979	chr3:46853374-46943854	Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv590206	chr3:46873957-46935527	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv876752	chr3:46879831-46967040	Bivalent/Poised TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv876753	chr3:46884552-46957298	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv876754	chr3:46884552-46967040	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv876755	chr3:46895109-47061183	Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
14	esv3344281	chr3:46923473-46926321	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46922600-46925600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
2	chr3:46922600-46926000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:46922800-46925600	Active TSS	Brain Cingulate Gyrus	brain
4	chr3:46923000-46925600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
5	chr3:46923200-46925600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
6	chr3:46923200-46926600	Active TSS	Right Atrium	heart
7	chr3:46923800-46925800	Active TSS	Brain Substantia Nigra	brain
8	chr3:46924400-46925800	Active TSS	Brain Angular Gyrus	brain
9	chr3:46924400-46925800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
10	chr3:46924400-46926600	Active TSS	Left Ventricle	heart
11	chr3:46924600-46925600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
12	chr3:46924800-46925800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:46925000-46925600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
14	chr3:46925000-46925600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
15	chr3:46925000-46925600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
16	chr3:46925000-46925600	Flanking Bivalent TSS/Enh	Placenta	Placenta
17	chr3:46925000-46925600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
18	chr3:46925000-46925600	Bivalent/Poised TSS	NHDF-Ad	bronchial
19	chr3:46925000-46925800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:46925000-46925800	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr3:46925000-46925800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
22	chr3:46925000-46926000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
23	chr3:46925000-46926600	Bivalent/Poised TSS	Fetal Kidney	kidney
24	chr3:46925000-46926800	Enhancers	Fetal Heart	heart
25	chr3:46925200-46925600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
26	chr3:46925200-46925600	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:46925200-46925600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
28	chr3:46925200-46925600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
29	chr3:46925200-46925600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr3:46925200-46925600	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
31	chr3:46925200-46925800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
32	chr3:46925200-46925800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:46925200-46925800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
34	chr3:46925200-46925800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
35	chr3:46925200-46925800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
36	chr3:46925200-46926200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr3:46925200-46926200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
38	chr3:46925200-46926400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
39	chr3:46925200-46926800	Flanking Bivalent TSS/Enh	Fetal Lung	lung
40	chr3:46925200-46933000	Weak transcription	Pancreas	Pancrea
41	chr3:46925400-46925600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
42	chr3:46925400-46925600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr3:46925400-46925600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
44	chr3:46925400-46925600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:46925400-46925600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:46925400-46925600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
47	chr3:46925400-46925600	Bivalent Enhancer	Brain Anterior Caudate	brain
48	chr3:46925400-46925600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
49	chr3:46925400-46925600	Bivalent Enhancer	Colon Smooth Muscle	Colon
50	chr3:46925400-46925600	Bivalent/Poised TSS	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links