Variant report

Variant	rs11927391
Chromosome Location	chr3:141026385-141026386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TFDP2-11	chr3:141025328-141030534	NONHSAT092424

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs955216	0.90[GIH][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.82[AMR][1000 genomes]
rs9968231	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877551	chr3:140970556-141029860	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141012000-141027200	Weak transcription	Pancreas	Pancrea
2	chr3:141012000-141027400	Weak transcription	Gastric	stomach
3	chr3:141012000-141029800	Weak transcription	Right Ventricle	heart
4	chr3:141012200-141029800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:141012200-141029800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:141012200-141029800	Weak transcription	Left Ventricle	heart
7	chr3:141014000-141029800	Weak transcription	Spleen	Spleen
8	chr3:141014000-141030000	Weak transcription	Aorta	Aorta
9	chr3:141014200-141029800	Weak transcription	Right Atrium	heart
10	chr3:141021800-141029800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:141021800-141029800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:141022600-141029400	Weak transcription	Hela-S3	cervix
13	chr3:141022600-141029800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:141022800-141027000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:141022800-141027200	Weak transcription	Brain Anterior Caudate	brain
16	chr3:141022800-141027200	Weak transcription	Placenta	Placenta
17	chr3:141022800-141027400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:141022800-141029600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:141022800-141030000	Weak transcription	HSMMtube	muscle
20	chr3:141023000-141027400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr3:141023000-141027400	Weak transcription	NHEK	skin
22	chr3:141023000-141029400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:141023000-141029600	Weak transcription	Adipose Nuclei	Adipose
24	chr3:141023000-141029800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:141023000-141029800	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:141023000-141029800	Weak transcription	Brain Substantia Nigra	brain
27	chr3:141023000-141029800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:141023000-141030000	Weak transcription	Esophagus	oesophagus
29	chr3:141023200-141027200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:141023200-141029800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr3:141023200-141029800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr3:141023200-141029800	Weak transcription	Osteobl	bone
33	chr3:141023400-141029800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:141023600-141029600	Weak transcription	Fetal Heart	heart
35	chr3:141024000-141029600	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr3:141024400-141027600	Enhancers	Fetal Thymus	thymus
37	chr3:141024400-141029400	Weak transcription	A549	lung
38	chr3:141024800-141027000	Weak transcription	HepG2	liver
39	chr3:141024800-141029800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr3:141025200-141027200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr3:141025200-141027600	Enhancers	Thymus	Thymus
42	chr3:141025200-141027600	Enhancers	Dnd41	blood
43	chr3:141025400-141027000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr3:141025600-141026400	Enhancers	Fetal Intestine Small	intestine
45	chr3:141025600-141026600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr3:141025600-141027000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr3:141025800-141026400	Enhancers	GM12878-XiMat	blood
48	chr3:141025800-141029800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr3:141025800-141029800	Weak transcription	NHDF-Ad	bronchial
50	chr3:141026000-141026400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

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