Variant report

Variant	rs11927798
Chromosome Location	chr3:43270665-43270666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11129996	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12715387	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12715388	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13059783	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13060695	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13066699	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13074235	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13085652	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1320158	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1573931	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17075335	0.82[EUR][1000 genomes]
rs2372354	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2372356	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2888295	0.82[EUR][1000 genomes]
rs2888296	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4016130	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4260403	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4404425	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4419357	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4444688	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4637262	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4683363	0.81[EUR][1000 genomes]
rs4683364	0.81[EUR][1000 genomes]
rs6442144	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6762503	0.82[EUR][1000 genomes]
rs6781696	0.82[EUR][1000 genomes]
rs6805075	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7627198	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7636673	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7639584	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7639605	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7648154	0.80[AMR][1000 genomes]
rs9311334	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9311335	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9311336	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9820946	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9822961	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9826102	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9826849	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9827911	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9833793	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9852399	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9853795	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9858012	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9860007	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9860364	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9861337	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9861529	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv965160	chr3:43264197-43270925	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43269600-43272600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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