Variant report

Variant	rs11928072
Chromosome Location	chr3:112607449-112607450
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10804507	0.97[ASN][1000 genomes]
rs1812704	0.99[ASN][1000 genomes]
rs1919015	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2399438	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2399439	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2399440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682122	0.99[ASN][1000 genomes]
rs4682124	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4682446	0.83[AMR][1000 genomes]
rs66682130	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs66732921	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66948543	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67184855	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67562655	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6767131	0.99[ASN][1000 genomes]
rs6781132	0.84[EUR][1000 genomes]
rs6808401	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3501334	chr3:112546820-112648766	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3501335	chr3:112546820-112648766	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112602600-112608400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:112604200-112616400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:112606800-112607800	Weak transcription	HSMM	muscle
4	chr3:112607000-112607600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:112607200-112608600	Enhancers	Primary B cells from cord blood	blood
6	chr3:112607200-112608800	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:112607200-112608800	Enhancers	HSMMtube	muscle
8	chr3:112607400-112607600	Enhancers	A549	lung
9	chr3:112607400-112608200	Enhancers	Adipose Nuclei	Adipose
10	chr3:112607400-112609000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr3:112607400-112609000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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