Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr3:118964457-118965025	ECC-1	luminal epithelium:	n/a	n/a
2	NFIC	chr3:118964560-118965058	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:118959173..118960818-chr3:118962533..118964753,2	MCF-7	breast:
2	chr3:118963037..118965160-chr3:118965901..118967414,2	K562	blood:
3	chr3:118958454..118960388-chr3:118964241..118966055,2	K562	blood:

Variant related genes	Relation type
B4GALT4	TF binding region
ENSG00000121578	Chromatin interaction

rSNPs within LD-proxies of this variant (count:15)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118960200-118964800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:118960400-118966200	Weak transcription	Primary T cells from cord blood	blood
3	chr3:118960600-118964800	Weak transcription	Adipose Nuclei	Adipose
4	chr3:118960600-118964800	Weak transcription	Placenta	Placenta
5	chr3:118961600-118967400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:118962800-118966000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:118964200-118964800	Enhancers	Psoas Muscle	Psoas
8	chr3:118964200-118965000	Enhancers	Fetal Muscle Trunk	muscle
9	chr3:118964200-118965800	Enhancers	Fetal Muscle Leg	muscle
10	chr3:118964400-118965000	Enhancers	Duodenum Mucosa	Duodenum
11	chr3:118964400-118965200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:118964400-118965400	Enhancers	Esophagus	oesophagus
13	chr3:118964600-118965000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:118964600-118965000	Enhancers	Right Ventricle	heart
15	chr3:118964600-118965000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:118964600-118965200	Enhancers	Left Ventricle	heart
17	chr3:118964600-118965200	Enhancers	Right Atrium	heart
18	chr3:118964600-118965200	Enhancers	Stomach Mucosa	stomach
19	chr3:118964600-118965600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr3:118964600-118965800	Enhancers	Lung	lung

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