Variant report

Variant	rs11929118
Chromosome Location	chr3:46505416-46505417
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46495712..46498114-chr3:46504861..46507290,2	K562	blood:

Variant related genes	Relation type
ENSG00000012223	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11716682	1.00[YRI][hapmap]
rs7644995	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1009892	chr3:46496775-46546918	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv536553	chr3:46496775-46546918	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46503800-46506800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr3:46504000-46506800	Bivalent Enhancer	Fetal Muscle Leg	muscle
3	chr3:46504000-46506800	Enhancers	Lung	lung
4	chr3:46504200-46506800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr3:46504600-46506600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
6	chr3:46504800-46505800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
7	chr3:46504800-46505800	Enhancers	Pancreas	Pancrea
8	chr3:46504800-46506000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
9	chr3:46504800-46506200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:46504800-46507000	Enhancers	Right Ventricle	heart
11	chr3:46504800-46509000	Enhancers	Spleen	Spleen
12	chr3:46505000-46506000	Weak transcription	Right Atrium	heart
13	chr3:46505000-46506600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
14	chr3:46505000-46507400	Weak transcription	Psoas Muscle	Psoas
15	chr3:46505200-46505600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
16	chr3:46505200-46506000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:46505200-46506800	Enhancers	Left Ventricle	heart
18	chr3:46505400-46505600	Bivalent Enhancer	Colonic Mucosa	Colon
19	chr3:46505400-46505600	Bivalent Enhancer	Fetal Heart	heart
20	chr3:46505400-46505600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
21	chr3:46505400-46506200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
22	chr3:46505400-46506400	Active TSS	Gastric	stomach
23	chr3:46505400-46506800	Enhancers	Esophagus	oesophagus

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