Variant report

Variant	rs11929568
Chromosome Location	chr3:111441672-111441673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10511301	0.82[ASW][hapmap];0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs10804492	0.88[ASW][hapmap];0.89[LWK][hapmap]
rs11922220	0.82[ASW][hapmap]
rs2292517	0.90[ASN][1000 genomes]
rs2399395	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4502554	0.82[ASW][hapmap]
rs6794420	0.82[ASW][hapmap];0.83[LWK][hapmap];0.82[YRI][hapmap]
rs6796976	0.82[ASW][hapmap];0.83[LWK][hapmap];0.82[YRI][hapmap]
rs7629156	0.88[ASW][hapmap];0.89[LWK][hapmap]
rs951338	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591290	chr3:111427455-111462570	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111410600-111443400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:111415200-111454200	Weak transcription	Small Intestine	intestine
3	chr3:111418200-111442000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:111420400-111450600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr3:111420600-111445600	Weak transcription	HepG2	liver
6	chr3:111424600-111441800	Weak transcription	Thymus	Thymus
7	chr3:111425800-111443800	Weak transcription	Dnd41	blood
8	chr3:111427000-111442400	Weak transcription	Ovary	ovary
9	chr3:111427200-111448400	Weak transcription	Right Ventricle	heart
10	chr3:111427600-111456000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:111428800-111445200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:111428800-111451200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:111429400-111446800	Weak transcription	Fetal Intestine Large	intestine
14	chr3:111429600-111442400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:111431600-111443800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:111431600-111443800	Weak transcription	Fetal Brain Female	brain
17	chr3:111431600-111451400	Weak transcription	Gastric	stomach
18	chr3:111432000-111442200	Weak transcription	HSMM	muscle
19	chr3:111432000-111448400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:111432000-111448600	Weak transcription	Brain Germinal Matrix	brain
21	chr3:111432200-111442200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:111432400-111445000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr3:111433600-111444000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:111433800-111447000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:111434000-111442000	Weak transcription	HSMMtube	muscle
26	chr3:111434000-111443400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr3:111434000-111451200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr3:111434200-111442600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:111435200-111447800	Weak transcription	HUVEC	blood vessel
30	chr3:111435600-111442200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:111436800-111442000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr3:111436800-111442000	Weak transcription	NH-A	brain
33	chr3:111436800-111442200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:111436800-111442200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:111436800-111442200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:111436800-111442200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:111436800-111442200	Weak transcription	HMEC	breast
38	chr3:111436800-111448400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr3:111437000-111442000	Weak transcription	NHEK	skin
40	chr3:111437000-111442000	Weak transcription	Osteobl	bone
41	chr3:111437600-111442000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:111437800-111442200	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr3:111437800-111442200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr3:111438000-111442000	Weak transcription	Fetal Heart	heart
45	chr3:111438400-111442000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:111438400-111442000	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr3:111438400-111442200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr3:111438600-111442000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:111438600-111444000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr3:111438800-111443200	Strong transcription	Primary T cells from cord blood	blood

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