Variant report

Variant	rs11929589
Chromosome Location	chr3:53684020-53684021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11709171	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11719110	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs17237537	1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53676800-53688600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:53677600-53700000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:53678000-53687000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:53679200-53684400	Weak transcription	Fetal Brain Female	brain
5	chr3:53681400-53685600	Weak transcription	Fetal Intestine Large	intestine
6	chr3:53681600-53686000	Weak transcription	Fetal Intestine Small	intestine
7	chr3:53682400-53686000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:53682600-53684200	Weak transcription	Fetal Kidney	kidney
9	chr3:53682600-53684200	Weak transcription	Fetal Lung	lung
10	chr3:53682800-53684400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:53683200-53744200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:53683800-53684600	Enhancers	Primary B cells from peripheral blood	blood
13	chr3:53683800-53685600	Enhancers	GM12878-XiMat	blood
14	chr3:53684000-53684200	Enhancers	Psoas Muscle	Psoas
15	chr3:53684000-53684200	Enhancers	Right Atrium	heart
16	chr3:53684000-53684800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr3:53684000-53685800	Enhancers	Stomach Smooth Muscle	stomach
18	chr3:53684000-53686200	Enhancers	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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